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asc:tutorials:2014october_connect
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asc:tutorials:2014october_connect [2014/10/09 19:31] asc [Lesson 6: Working on the ANL farm] |
asc:tutorials:2014october_connect [2014/10/10 15:28] (current) asc [Lesson 6: Using HTCondor and Tier2] |
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| ====== Lesson 5: Running on multiple cores ====== | ====== Lesson 5: Running on multiple cores ====== | ||
| - | This example is not needed for ATLAS connect. | + | This example is not needed for ATLAS connect. |
| + | look at [[asc: | ||
| - | ====== Lesson 6: Working on the ANL farm ====== | + | ====== Lesson 6: Using HTCondor and Tier2 ====== |
| Lesson 5: Working on a Tier3 farm (Condor queue) | Lesson 5: Working on a Tier3 farm (Condor queue) | ||
| - | In this example we will use HTCondor workload management system to send the job to be executed in a queue at a Tier3 farm. | + | In this example we will use HTCondor workload management system to send the job to be executed in a queue at a Tier3 farm. For this example we will start from the directory lesson 4, so if you did not do the lesson 4 please do that one first and verify that your code runs locally. |
| - | + | ||
| - | For this example we will start from the directory lesson 4, so if you did not do the lesson 4 please do that one first and verify that your code runs locally. | + | |
| Start from the new shell and set up environment, | Start from the new shell and set up environment, | ||
| - | startJob.sh | ||
| - | <code bash> | + | <file bash startJob.sh> |
| - | #!/bin/zsh | + | #!/bin/bash |
| export RUCIO_ACCOUNT=YOUR_CERN_USERNAME | export RUCIO_ACCOUNT=YOUR_CERN_USERNAME | ||
| export ATLAS_LOCAL_ROOT_BASE=/ | export ATLAS_LOCAL_ROOT_BASE=/ | ||
| Line 241: | Line 238: | ||
| testRun submitDir | testRun submitDir | ||
| echo " | echo " | ||
| - | </code> | + | </file> |
| Make sure the RUCIO_ACCOUNT variable is properly set. Make this file executable and create the file that describes our job needs and that we will give to condor: | Make sure the RUCIO_ACCOUNT variable is properly set. Make this file executable and create the file that describes our job needs and that we will give to condor: | ||
| - | <code bash> | + | <file bash job.sub> |
| - | job.sub | + | |
| Jobs=10 | Jobs=10 | ||
| getenv | getenv | ||
| Line 259: | Line 255: | ||
| # | # | ||
| queue $(Jobs) | queue $(Jobs) | ||
| - | </code> | + | </file> |
| To access files using FAX the jobs need a valid grid proxy. That's why we send it with each job. Proxy is the file starting with " | To access files using FAX the jobs need a valid grid proxy. That's why we send it with each job. Proxy is the file starting with " | ||
| Line 265: | Line 261: | ||
| You need to pack all of the working directory into a payload.zip file: | You need to pack all of the working directory into a payload.zip file: | ||
| - | <code bash> | + | <file bash startJob.sh> |
| startJob.sh | startJob.sh | ||
| rc clean | rc clean | ||
| rm -rf RootCoreBin | rm -rf RootCoreBin | ||
| zip -r payload.zip * | zip -r payload.zip * | ||
| - | </code> | + | </file> |
| Now you may submit your task for the execution and follow its status in this way: | Now you may submit your task for the execution and follow its status in this way: | ||
| - | startJob.sh | + | |
| + | < | ||
| + | chmod 755 ./ | ||
| + | </ | ||
| <code bash> | <code bash> | ||
asc/tutorials/2014october_connect.1412883063.txt.gz · Last modified: 2014/10/09 19:31 by asc
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