P0I

java.lang.Object
- cern.colt.PersistentObject
- - cern.colt.list.AbstractCollection
  - - cern.colt.list.AbstractList
    - - cern.colt.list.AbstractIntList
      - cern.colt.list.IntArrayList
        
        jhplot.P0I

All Implemented Interfaces:

IntBufferConsumer, Serializable, Cloneable
```
public class P0I
extends IntArrayList
implements Serializable
```
A container to hold integer data points in one dimension. All numbers are expected to be in double precision. It extends ArrayList and adds many new features for data manipulation. The class does not have graphical option (use H1D to show the data or methods of this class which transform P0I to a H1D histogram).
This is a high-speed a small footprint container designed for numerical analysis.

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description
`P0I()` Construct an empty container with a title
`P0I(int[] d)` Construct P0I from array;
`P0I(String title)` Construct an empty container with a title
`P0I(String title, int[] d)` Create P0I from an array.
`P0I(String title, P0I p)` Construct a copy from a P0I.
`P0I(String title, String sfile)` Construct a P0I from a file.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`containsAll(double[] array)` Tests the collection to determine if all of the elements in array are present.
`P0I`	`copy()` Get a copy of the current holder
`P0I`	`copy(String newtitle)` Create an exact copy of the current P0I.
`double`	`correlation(P0I P0I)` Returns the correlation coefficient.
`double`	`covariance(P0I P0I)` Returns the covariance
`void`	`doc()` Show online documentation.
`void`	`fill(double[] values)` Fill a P0I container from an array.
`void`	`fill(int[] values)` Fill a P0I container from an array.
`void`	`fill(int TotNumber, double min, double max)` Fill with a sequence of numbers between min and max.
`int`	`find(int d)` Returns the index of first occurrence of the specified element
`P0I`	`func(F1D f1d)` Transform P0I array to array with values given by a function.
`P0I`	`func(String title, F1D f1d)` Make transformation of P0I using a function.
`P0I`	`get(int d, String opi)` Get P0I with values below, above or equal a specified value.
`int[]`	`getArray()` Get a double array with P0I values.
`double[]`	`getArrayDouble()` Get a double array with P0I values.
`int[]`	`getArrayInt()` Get an integer array with P0I values.
`ArrayList<Double>`	`getArrayList()` Get data in form of ArrayList
`H1D`	`getH1D(int bins)` Return H1D histogram with P0I content.
`H1D`	`getH1D(int bins, double min, double max)` Return H1D histogram with P0I content.
`DoubleArrayList`	`getIntegerArrayList()` Get data in form of DoubleArrayList from cern.colt package
`int`	`getMax()` Returns the minimum value.
`int`	`getMaxIndex()` Returns index corresponding to maximum value.
`int`	`getMin()` Returns the minimum value.
`int`	`getMinIndex()` Returns index corresponding to minimum value.
`Map<String,Double>`	`getStat()` Get complete statistics for this container.
`String`	`getStatString()` Get string with all statistics
`String`	`getStringValues()` Return all values as a string.
`String`	`getTitle()` Get a new title
`int`	`hashCode()` Returns the hash code value for this collection.
`double`	`kurtosis()` Returns the kurtosis.
`int`	`lastIndexOf(int offset, int value)` Searches the list back to front for the last index of value, starting at offset.
`double`	`mean()` Returns the mean value.
`double`	`median()` Returns the median.
`P0I`	`merge(P0I a)` Merge two P0I containers
`double`	`moment(int k, double c)` Returns the moment of k-th order with value c, which is Sum( (x[i]-c)k ) / size().
`P0I`	`oper(P0I p, String what)` Operations on P0I containers: add, subtract, multiply, divide.
`P0I`	`oper(P0I p0i, String title, String what)` Operations on P0I containers: add, subtract, multiply, divide.
`P0I`	`operScale(double scale)` Scale P0I with a factor scale.
`P0I`	`operShift(double shift)` Shift all values in the array by a constant.
`P0I`	`operShiftAndScale(double shift, double scale)` Shift all values by a constant "shift", then scale it.
`void`	`print()` Print a P0I container.
`void`	`random(int TotNumber, AbstractDistribution dist)` Fill array with random numbers Random generators are taken from cern.jet.random.*.
`void`	`randomNormal(int TotNumber, double mu, double sigma)` Fill with random numbers distributed using the normal (gaussian) distribution.
`void`	`randomUniform(int TotNumber, double min, double max)` Fill with with uniform random numbers between min and max.
`P0I`	`range(int min, int max)` Get range between min and max
`int`	`read(BufferedReader br)` Read one dimensional data from uncompressed ASCII file.
`int`	`read(File sfile)` Read P0I from a file.
`int`	`read(String sfile)` Read PNI from a file.
`int`	`read(URL url)` Read data from URL.
`int`	`readBinary(String name)` Read a P0I from a binary file (big endian by default).
`int`	`readGZip(File sfile)` Read PNI from a GZiped file.
`int`	`readGZip(String sfile)` Read P0I from a GZiped file.
`P0I`	`readSerialized(String name)` Read a P0I object from a serialized file
`int`	`readZip(String sfile)` Read one dimensional data from ZIP ASCII file.
`void`	`removeAll(int min, int max)` Remove elements
`int`	`search(int value)` Search for the first occurrence of the given argument
`void`	`setArray(int[] array)` Set a double array.
`void`	`setArrayList(ArrayList<Integer> array)` Set the data in form of ArrayList
`void`	`setTitle(String title)` Set a new title
`double`	`skew()` Returns the skew, which is moment(3,mean()) / standardDeviation() Run getStat(0 for evaluation
`void`	`sort(int fromIndex, int toIndex)` Sort a slice of the list (ascending) using the Sun quicksort implementation.
`int[]`	`sortIndex()` Return indexes of sorted array in increasing order.
`double`	`standardError()` Returns the sample standard error, which is Math.sqrt(variance() / size()).
`double`	`stddeviation()` Returns the standard deviation (square root of variance)
`void`	`toFile(String name)` Write a P0I to an external file.
`String`	`toString()` Get a P0I as a string.
`void`	`toTable()` Print the P0I container to a Table in a separate Frame.
`double`	`variance()` Returns the variance.
`void`	`writeBinary(String name)` Write a P0I to a binary file (big endian by default).
`int`	`writeSerialized(String name)` Write a P0I object to a serialized file

Methods inherited from class cern.colt.list.IntArrayList
add, beforeInsert, binarySearchFromTo, clone, elements, elements, ensureCapacity, equals, fillRandom, forEach, get, getQuick, indexOfFromTo, lastIndexOfFromTo, partFromTo, removeAll, replaceFromToWithFrom, retainAll, reverse, set, setQuick, shuffleFromTo, sortFromTo, trimToSize

Methods inherited from class cern.colt.list.AbstractIntList
addAllOf, addAllOfFromTo, beforeInsertAllOfFromTo, binarySearch, contains, delete, fillFromToWith, indexOf, lastIndexOf, mergeSortFromTo, mergeSortFromTo, quickSortFromTo, quickSortFromTo, removeFromTo, replaceFromToWithFromTo, replaceFromWith, size, times, toList

Methods inherited from class cern.colt.list.AbstractList
addAllOf, beforeInsertAllOf, clear, mergeSort, quickSort, remove, setSize, shuffle, sort

Methods inherited from class cern.colt.list.AbstractCollection
isEmpty

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - P0I
```
public P0I(String title)
```
    Construct an empty container with a title
    
    Parameters:
    
    title - New title
  - P0I
```
public P0I(int[] d)
```
    Construct P0I from array;
    
    Parameters:
    
    d - array
  - P0I
```
public P0I(String title,
           int[] d)
```
    Create P0I from an array.
    
    Parameters:
    
    title - title
    
    d - input array
  - P0I
```
public P0I(String title,
           P0I p)
```
    Construct a copy from a P0I. If the last argument is true, a shallow copy of a collection. In this case a new collection contains references to same objects as the source collection. Data are not cloned
    
    Parameters:
    
    title - new title
    
    p - input data in form of P0I
  - P0I
```
public P0I()
```
    Construct an empty container with a title
  - P0I
```
public P0I(String title,
           String sfile)
```
    Construct a P0I from a file. Use "#" or "*" for comments. each number should be written in separate line.
    
    Parameters:
    
    title - Title of the container
    
    sfile - File name with input. Can be either file location or URL. Must start as http or ftp
- Method Detail
  - setTitle
```
public void setTitle(String title)
```
    Set a new title
    
    Parameters:
    
    title - New Title
  - getTitle
```
public String getTitle()
```
    Get a new title
    
    Returns:
    
    Title
  - read
```
public int read(BufferedReader br)
```
    Read one dimensional data from uncompressed ASCII file. Use "#" or "*" for comments. Each number should be written on a separate line.
    
    Parameters:
    
    sfile - File name with input
    
    Returns:
    
    error: 0 in case of success. 3: parse error. 1-2: file not found.
  - read
```
public int read(File sfile)
```
    Read P0I from a file. The old content will be lost. Comment lines starting with "#" and "*" are ignored.
    
    Parameters:
    
    sfile - input file
    
    Returns:
    
    zero if success
  - read
```
public int read(URL url)
```
    Read data from URL. Use a space to separate values in columns and tab to put new row.
    
    Parameters:
    
    url - URL location of input file
  - readGZip
```
public int readGZip(String sfile)
```
    Read P0I from a GZiped file. It can read URL if the string starts from http or ftp, otherwise a file on the file system is assumed.
    Use a space to separate values in columns and tab to put new row.
    
    Parameters:
    
    sfile - File name with input (extension .gz)
    
    Returns:
    
    zero if success
  - read
```
public int read(String sfile)
```
    Read PNI from a file. It can read URL if the string starts from http or ftp, otherwise a file on the file system is assumed.
    The old content will be lost. Use a space to separate values in columns and tab to put new row. Comment lines starting with "#" and "*" are ignored.
    
    Parameters:
    
    sfile - File name with input
    
    Returns:
    
    zero if success
  - readGZip
```
public int readGZip(File sfile)
```
    Read PNI from a GZiped file. The old content will be lost. Comment lines start from "#" and "*" are ignored.
    
    Parameters:
    
    sfile - File name with input (extension .gz)
    
    Returns:
    
    zero if success
  - readZip
```
public int readZip(String sfile)
```
    Read one dimensional data from ZIP ASCII file. Use "#" or "*" for comments. Each number should be written in separate line.
    
    Parameters:
    
    sfile - Zipped file name with input (file extension .zip)
    
    Returns:
    
    error (int): 0 in case of success. 3: parse error. 1-2: file not found.
  - toFile
```
public void toFile(String name)
```
    Write a P0I to an external file.
    
    Parameters:
    
    name - File name with output
  - writeBinary
```
public void writeBinary(String name)
```
    Write a P0I to a binary file (big endian by default).
    
    Parameters:
    
    name - Binary file name for the output.
  - writeSerialized
```
public int writeSerialized(String name)
```
    Write a P0I object to a serialized file
    
    Parameters:
    
    name - serialized file name for output.
    
    Returns:
    
    zero if no errors
  - readSerialized
```
public P0I readSerialized(String name)
```
    Read a P0I object from a serialized file
    
    Parameters:
    
    name - serialized file name for input.
    
    Returns:
    
    new P0I object
  - readBinary
```
public int readBinary(String name)
```
    Read a P0I from a binary file (big endian by default). Old elements will be removed. Only read files created by the method writeBinary().
    
    Parameters:
    
    name - Binary file name for input.
    
    Returns:
    
    0 in case of no problems
  - toString
```
public String toString()
```
    Get a P0I as a string.
    
    Overrides:
    
    toString in class AbstractIntList
    
    Returns:
    
    Output String. Each value separated by new line.
  - randomNormal
```
public void randomNormal(int TotNumber,
                         double mu,
                         double sigma)
```
    Fill with random numbers distributed using the normal (gaussian) distribution. Previous content will be lost.
    
    Parameters:
    
    TotNumber - total number of random values
    
    mu - mean value
    
    sigma - Standard deviation of the random variable.
  - fill
```
public void fill(int TotNumber,
                 double min,
                 double max)
```
    Fill with a sequence of numbers between min and max. min and max are included to the range, If non-empty, previous content will be lost.
    The step is evaluated as (max-min) / (TotNumber -1). For example, fill(11,0,10) will fill with 11 number: 0,1,2,3,4,5,6,7,8,9,10
    
    Parameters:
    
    TotNumber - total number of values.
    
    min - min value
    
    max - max value
  - randomUniform
```
public void randomUniform(int TotNumber,
                          double min,
                          double max)
```
    Fill with with uniform random numbers between min and max. Previous content will be lost.
    
    Parameters:
    
    TotNumber - of random values
    
    min - min random value
    
    max - max random value
  - random
```
public void random(int TotNumber,
                   AbstractDistribution dist)
```
    Fill array with random numbers Random generators are taken from cern.jet.random.*. Examples: Beta, Binominal, Poisson, BreitWigner,ChiSquare,Empirical Exponential, Gamma, Hyperbolic, Logarithmic, Normal, NegativeBinomial
    
    Parameters:
    
    TotNumber - Total number in array
    
    dist - A custom random distribution from cern.jet.random.*.
  - getH1D
```
public H1D getH1D(int bins)
```
    Return H1D histogram with P0I content. Histogram range is defined by Min and Max values.
    
    Parameters:
    
    bins - Number of bins for the histogram.
    
    Returns:
    
    H2D histogram filled with P0I.
  - getH1D
```
public H1D getH1D(int bins,
                  double min,
                  double max)
```
    Return H1D histogram with P0I content. Histogram range is defined by Min and Max values.
    
    Parameters:
    
    min - Min value of histogram
    
    max - Max value of histogram
    
    bins - Number of bins for the histogram.
    
    Returns:
    
    H2D histogram filled with P0I.
  - print
```
public void print()
```
    Print a P0I container.
  - merge
```
public P0I merge(P0I a)
```
    Merge two P0I containers
    
    Parameters:
    
    a - Container to be merged
    
    Returns:
    
    merged P0I container
  - fill
```
public void fill(double[] values)
```
    Fill a P0I container from an array. If it is not empty, add values will be appended.
    
    Parameters:
    
    values - array with double values
  - fill
```
public void fill(int[] values)
```
    Fill a P0I container from an array. If it is not empty, add values will be appended. Integers will be converted to double.
    
    Parameters:
    
    values - array with double values
  - copy
```
public P0I copy()
```
    Get a copy of the current holder
    
    Overrides:
    
    copy in class IntArrayList
    
    Returns:
    
    a new copy
  - getArrayList
```
public ArrayList<Double> getArrayList()
```
    Get data in form of ArrayList
    
    Returns:
    
    data in form of ArrayList
  - getStringValues
```
public String getStringValues()
```
    Return all values as a string. Values are separated by space
    
    Returns:
    
    values as a single string
  - sort
```
public void sort(int fromIndex,
                 int toIndex)
```
    Sort a slice of the list (ascending) using the Sun quicksort implementation.
    
    Parameters:
    
    fromIndex -
    
    toIndex -
  - hashCode
```
public int hashCode()
```
    Returns the hash code value for this collection.
    
    Overrides:
    
    hashCode in class Object
  - lastIndexOf
```
public int lastIndexOf(int offset,
                       int value)
```
    Searches the list back to front for the last index of value, starting at offset.
    
    Parameters:
    
    offset -
    
    value -
    
    Returns:
  - containsAll
```
public boolean containsAll(double[] array)
```
    Tests the collection to determine if all of the elements in array are present.
    
    Parameters:
    
    array -
    
    Returns:
    
    true if contains
  - removeAll
```
public void removeAll(int min,
                      int max)
```
    Remove elements
    
    Parameters:
    
    min - min index
    
    max - max index
  - setArrayList
```
public void setArrayList(ArrayList<Integer> array)
```
    Set the data in form of ArrayList
    
    Parameters:
    
    array - ArrayList to be set.
  - setArray
```
public void setArray(int[] array)
```
    Set a double array. Old content will be lost.
    
    Parameters:
    
    array - array used to fill P0I
  - copy
```
public P0I copy(String newtitle)
```
    Create an exact copy of the current P0I.
    
    Parameters:
    
    newtitle - new title
  - get
```
public P0I get(int d,
               String opi)
```
    Get P0I with values below, above or equal a specified value. Specify in the input string "<,> or =".
    
    Parameters:
    
    d - input values
    
    opi - if "=", take equal values;
    if ">", take above values;
    if "<", take below values;
  - find
```
public int find(int d)
```
    Returns the index of first occurrence of the specified element
    
    Parameters:
    
    d - input value
  - getArray
```
public int[] getArray()
```
    Get a double array with P0I values.
    
    Returns:
    
    double array with values
  - getArrayInt
```
public int[] getArrayInt()
```
    Get an integer array with P0I values.
    
    Returns:
    
    integer array with values
  - search
```
public int search(int value)
```
    Search for the first occurrence of the given argument
    
    Parameters:
    
    value - value for searching
    
    Returns:
    
    first occurrence of the given argument
  - getMax
```
public int getMax()
```
    Returns the minimum value.
    
    Returns:
    
    the minimum value.
  - getMaxIndex
```
public int getMaxIndex()
```
    Returns index corresponding to maximum value.
    
    Returns:
    
    index of maximum value.
  - getMinIndex
```
public int getMinIndex()
```
    Returns index corresponding to minimum value.
    
    Returns:
    
    index of minimum value.
  - getMin
```
public int getMin()
```
    Returns the minimum value.
    
    Returns:
    
    the minimum value.
  - range
```
public P0I range(int min,
                 int max)
```
    Get range between min and max
    
    Parameters:
    
    min - index
    
    max - index
    
    Returns:
    
    same P0I with removed range
  - oper
```
public P0I oper(P0I p,
                String what)
```
    Operations on P0I containers: add, subtract, multiply, divide. Keep the same graphical attributes and the title.
    
    Parameters:
    
    Pp - Input P0I container for operation
    
    what - String representing the operation: "+" add a P0I container to the original; "-" subtract a P0I from the original; "*" multiply; "/" divide by P0I
    
    Returns:
    
    original P0I after the operation.
  - operScale
```
public P0I operScale(double scale)
```
    Scale P0I with a factor scale. X(i)=scale*X(i)
    
    Parameters:
    
    scale - Scale factor
    
    Returns:
    
    P0I after the operation.
  - operShift
```
public P0I operShift(double shift)
```
    Shift all values in the array by a constant. X(i)=X(i)+shift.
    
    Parameters:
    
    shift - constants used to add
    
    Returns:
    
    P0I after shift.
  - operShiftAndScale
```
public P0I operShiftAndScale(double shift,
                             double scale)
```
    Shift all values by a constant "shift", then scale it. X(i)=(X(i)+shift)*scale.
    
    Parameters:
    
    shift - constants used to add to all values
    
    scale - constant used to scale after shifting.
    
    Returns:
    
    P0I after shift and scale.
  - oper
```
public P0I oper(P0I p0i,
                String title,
                String what)
```
    Operations on P0I containers: add, subtract, multiply, divide. Keep the same graphical attributes
    
    Parameters:
    
    p0i - Input P0I container for operation
    
    title - New title
    
    what - String representing the operation: "+" add a P0I container to the original; "-" subtract a P0I from the original; "*" multiply; "/" divide by P0I
    
    Returns:
    
    original P0I after the operation.
  - mean
```
public double mean()
```
    Returns the mean value.
    
    Returns:
    
    Mean value
  - kurtosis
```
public double kurtosis()
```
    Returns the kurtosis. Run getStat() to update or evaluate the sampling
    
    Returns:
    
    kurtosis
  - median
```
public double median()
```
    Returns the median. First run getStat() to evaluate or update.
    
    Returns:
    
    median
  - getStatString
```
public String getStatString()
```
    Get string with all statistics
    
    Returns:
    
    string representing all statistics
  - getIntegerArrayList
```
public DoubleArrayList getIntegerArrayList()
```
    Get data in form of DoubleArrayList from cern.colt package
    
    Returns:
    
    data in form of DoubleArrayList
  - getStat
```
public Map<String,Double> getStat()
```
    Get complete statistics for this container. It return mean, error on the mean, RMS, variance, standard deviation.
    The key for the output map are: mean, error, rms, variance, stddev . Print the key to find out what is inside.
    
    Returns:
    
    map representing statistical characteristics of this data
  - moment
```
public double moment(int k,
                     double c)
```
    Returns the moment of k-th order with value c, which is Sum( (x[i]-c)k ) / size(). First run getStat() for evaluation
    
    Parameters:
    
    k - k-th order
    
    c - c
    
    Returns:
    
    moment
  - standardError
```
public double standardError()
```
    Returns the sample standard error, which is Math.sqrt(variance() / size()). Run getStat(0) before.
    
    Returns:
    
    sample standard error
  - skew
```
public double skew()
```
    Returns the skew, which is moment(3,mean()) / standardDeviation() Run getStat(0 for evaluation
    
    Returns:
    
    skewness
  - variance
```
public double variance()
```
    Returns the variance. Run getStat() first to update or evaluate
    
    Returns:
    
    variance
  - stddeviation
```
public double stddeviation()
```
    Returns the standard deviation (square root of variance)
    
    Returns:
    
    variance
  - covariance
```
public double covariance(P0I P0I)
```
    Returns the covariance
    
    Parameters:
    
    P0I - P0I object for covariance calculations
    
    Returns:
    
    covariance value
  - getArrayDouble
```
public double[] getArrayDouble()
```
    Get a double array with P0I values.
    
    Returns:
    
    Double array with values
  - correlation
```
public double correlation(P0I P0I)
```
    Returns the correlation coefficient. Values between 0 (no correlation) and 1 (full linear correlation)
    
    Parameters:
    
    P0I - P0I object for correlation calculation.
    
    Returns:
    
    correlation coefficient.
  - func
```
public P0I func(F1D f1d)
```
    Transform P0I array to array with values given by a function. The function may have up to 3 independent variables in it (x,y,z).
    This class is not fool proof. If the answer is wrong then use the parenthesis to force the order of evaluation. The most likely place this will be needed is in the use of the power command. The exponent is not evaluated correctly if it begins with a unary operator.
    List of commands
    - ( ) parenthesis , comma
    - +, -, unary -, unary +
    - , /
    - ^ (raise to a power)
    - pi, e, All the constants in class SpecialFunction
    - log
    - sin, cos, tan
    - asin, acos, atan
    - sqrt
    - rand
    - exp
    - remainder
    - atan2
    - All the functions in class SpecialFunction
    - Independent variables x,y,z
    - Scientific notation using "e", "E", "d", "D".
    Parameters:
    
    f1d - function for transformation
    
    Returns:
    
    transformed P0I
  - func
```
public P0I func(String title,
                F1D f1d)
```
    Make transformation of P0I using a function.
    
    Parameters:
    
    title - new title
    
    f1d - function for transformation
    
    Returns:
    
    transformed P0I
  - sortIndex
```
public int[] sortIndex()
```
    Return indexes of sorted array in increasing order. The array itself will not be changed, since it acts on a clone. Used quicksort stable algorithm.
    
    Returns:
    
    indexes of sorted array.
  - toTable
```
public void toTable()
```
    Print the P0I container to a Table in a separate Frame. The numbers are formatted to scientific format. One can sort and search the data in this table (but not modify)
  - doc
```
public void doc()
```
    Show online documentation.

Class P0I

Constructor Summary

Method Summary

Methods inherited from class cern.colt.list.IntArrayList

Methods inherited from class cern.colt.list.AbstractIntList

Methods inherited from class cern.colt.list.AbstractList

Methods inherited from class cern.colt.list.AbstractCollection

Methods inherited from class java.lang.Object

Constructor Detail

P0I

P0I

P0I

P0I

P0I

P0I

Method Detail

setTitle

getTitle

read

read

read

readGZip

read

readGZip

readZip

toFile

writeBinary

writeSerialized

readSerialized

readBinary

toString

randomNormal

fill

randomUniform

random

getH1D

getH1D

print

merge

fill

fill

copy

getArrayList

getStringValues

sort

hashCode

lastIndexOf

containsAll

removeAll

setArrayList

setArray

copy

get

find

getArray

getArrayInt

search

getMax

getMaxIndex

getMinIndex

getMin

range

oper

operScale

operShift

operShiftAndScale

oper

mean

kurtosis

median

getStatString

getIntegerArrayList

getStat

moment

standardError

skew

variance

stddeviation

covariance

getArrayDouble