hpc:lcgcmake
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Table of Contents
LCGCMake Installation Notes
This page documents my attempts to install the LCG software core on various non-traditional machines.
The basic installation instructions are here for a standard Scientific Linix CERN 6 installation: <html><b><a href=“http://ph-dep-sft.web.cern.ch/document/using-lcgcmake” target=“_blank”>LCGCMake SLC6 Installation </a></b></html>
Installing on Cooley@ALCF
Setup
- Clean Cooley Login (nothing from
.softrc.cooley
) - Create working directory
mkdir /path/to/lcg
export $LCG_PROJECT_PATH=/path/to/lcg
cd $LCG_PROJECT_PATH
soft add +cmake
soft add +gcc-4.8.1
Install Dependencies
mkdir dependencies
cd dependencies
mkdir install
procmail
wget ftp://ftp.ucsb.edu/pub/mirrors/procmail/procmail-3.22.tar.gz
tar zxf procmail-3.22.tar.gz
cd procmail-3.22
make lockfile CC=$(which gcc) CXX=$(which g++)
- press enter when prompted
- this only compiles
lockfile
because other parts of this package fail, but we don't need them.
cd ..
mkdir install/bin
ln -s $PWD/procmail-3.22/src/lockfile $PWD/install/bin/lockfile
libxml2
wget ftp://xmlsoft.org/libxml2/libxml2-2.9.2.tar.gz
tar zxf libxml2-2.9.2.tar.gz
cd libxml2-2.9.2
./configure --with-python --with-threads --prefix=/path/to/lcg/dependencies/install
make -j 10
make install
cd ..
libxslt
- xslt (bottom of page) (depends on libxml2)
git clone git://git.gnome.org/libxslt
cd libxslt
./autogen.sh --with-python --with-libxml-prefix=/path/to/lcg/dependencies/install --prefix=/path/to/lcg/dependencies/install
make -j 10
make install
- you may need to manually copy ./xslt-config to the install directory and change it's permissions.
cd ..
export environment
export PATH=/path/to/lcg/dependencies/install/bin:$PATH
export LD_LIBRARY_PATH=/path/to/lcg/dependencies/install/lib:$LD_LIBRARY_PATH
LCGCMake
Get LCGCMake repository
cd $LCG_PROJECT_PATH
svn co http://svn.cern.ch/guest/lcgsoft/trunk/lcgcmake
mkdir lcgcmake-build
mkdir lcgcmake-install
Before you build
- You have to force cmake to identify your machine as slc6 because some of the tarballs live on a webserver with
slc6
in the name, in the case of Cooley,slc6
gets replaced withlinux
and the downloads fail since there is no tarball withlinux
in the name. Editlcgcmake/cmake/toolchain/heptools-common.cmake
around line 75 fromelse() execute_process(COMMAND cat /etc/os-release OUTPUT_VARIABLE os_release OUTPUT_STRIP_TRAILING_WHITESPACE) if(os_release MATCHES "centos") set(os "cc") string(REGEX REPLACE ".*VERSION_ID=\"([0-9]+).*" "\\1" osvers "${os_release}") else() message(WARNING "Unkown OS, assuming 'linux'") set(os linux) set(osvers) endif() endif()
to
else() execute_process(COMMAND cat /etc/os-release OUTPUT_VARIABLE os_release OUTPUT_STRIP_TRAILING_WHITESPACE) if(os_release MATCHES "centos") set(os "cc") string(REGEX REPLACE ".*VERSION_ID=\"([0-9]+).*" "\\1" osvers "${os_release}") else() message(WARNING "Unkown OS, assuming 'slc6'") set(os "slc") set(osvers "6") endif() endif()
- Edit
lcgcmake/projects/CMakeLists.txt
line 244 in CORAL package fromSVN_REPOSITORY=http://svn.cern.ch/guest/lcgcoral/coral/tags/${CORAL_native_version} --quiet
to
SVN_REPOSITORY=http://svn.cern.ch/guest/lcgcoral/coral/tags/CORAL_${CORAL_native_version} --quiet
- Edit
lcgcmake/externals/CMakeLists.txt
lines 297 - 302 (or so) from#---Davix-------------------------------------------------------------------------------------------- LCGPackage_Add( Davix URL http://grid-deployment.web.cern.ch/grid-deployment/dms/lcgutil/tar/davix/davix-<NATIVE_VERSION>.tar.gz CONFIGURE_COMMAND ${CMAKE_COMMAND} -DCMAKE_INSTALL_PREFIX=<INSTALL_DIR> -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} -DBOOST_ROOT:PATHNAME=${Boost_home} -DBOOST_INCLUDEDIR=${Boost_home}/include -DBOOST_LIBRARYDIR=${Boost_home}/lib -DBoost_NO_BOOST_CMAKE=True <SOURCE_DIR> DEPENDS Boost )
to
#---Davix-------------------------------------------------------------------------------------------- LCGPackage_Add( Davix URL http://grid-deployment.web.cern.ch/grid-deployment/dms/lcgutil/tar/davix/davix-<NATIVE_VERSION>.tar.gz CONFIGURE_COMMAND ${CMAKE_COMMAND} -DCMAKE_INSTALL_PREFIX=<INSTALL_DIR> -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} -DBOOST_ROOT:PATHNAME=${Boost_home} -DBoost_INCLUDE_DIR:PATH=${Boost_home}/include/boost-1_55 -DBoost_LIBRARY_DIR_DEBUG:PATH=${Boost_home}/lib -DBoost_LIBRARY_DIR_RELEASE:PATH=${Boost_home}/lib -DBoost_NO_BOOST_CMAKE:BOOL=True -DCMAKE_C_COMPILER=${CMAKE_C_COMPILER} -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER} <SOURCE_DIR> DEPENDS Boost )
- Edit
lcgcmake/projects/CMakeLists.txt
and insert around line 99 to the ROOT package config-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER} -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
- Edit
lcgcmake/projects/CMakeLists.txt
around line 186 in the RELAX package and add the lines-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER} -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
.
- Edit
lcgcmake/generators/CMakeLists.txt
around line 1679 in the crmc package and add the lines-DCMAKE_MODULE_PATH=${CMAKE_SOURCE_DIR}/cmake/modules -DCMAKE_C_COMPILER=${CMAKE_C_COMPILER} -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
- Edit
lcgcmake/externals/CMakeLists.txt
around line 842 in the igprof package and comment out the-Wno-error=unused-result
.
Building LCG
cd lcgcmake-build
cmake -DCMAKE_INSTALL_PREFIX=../lcgcmake-install -DCMAKE_C_COMPILER=$(which gcc) -DCMAKE_CXX_COMPILER=$(which g++) ../lcgcmake
When Build Fails
When a build fails, look at this list for fixes, fix, then continue with make -j 10
.
- After the
pythia8
packages download and fail to build, the Makefile's must be edited, the fileslcgcmake-build/generators/pythia8-201/src/pythia8/201/Makefile
have$(CXX_SONAME),$(notdir $@)
which must be changed to-shared
.- sed 's/$(CXX_SONAME),$(notdir\ $@)/-shared/g' generators/pythia8-201/src/pythia8/201/Makefile > generators/pythia8-201/src/pythia8/201/Makefile.tmp
* After
evtgenpackage downloads and fails to build, the Makefile must be edited, the file
lcgcmake-build/generators/evtgen-1.2.0/src/evtgen/1.2.0/Makefilehave
$(shell find … )commands inside, Add
-not -path '*/\.*' to the end of these finds. This is to exclude the many stupid hidden files
._<fildname>that someone must have commit to the repo from their MAC. * After ROOT 6 downloads and fails the build, you can make the following edits to fix the ODBC files. Add to the files
lcgcmake-build/projects/ROOT-6.02.12/src/ROOT/6.02.12/sql/odbc/inc/TODBC*.ha
#include<sqlcli.h>just under the
#include<sql.h>at the top of the file. Add to the files
lcgcmake-build/projects/ROOT-6.02.12/src/ROOT/6.02.12/sql/odbc/src/TODBCServer.cxxand
lcgcmake-build/projects/ROOT-6.02.12/src/ROOT/6.02.12/sql/odbc/src/TODBCStatement.cxxa
#include<sqlcli1.h>'' at the top of the files.
- Create setup environment <file bash setup.sh>
#!/usr/bin/env bash soft add +cmake soft add +gcc-4.8.1
hpc/lcgcmake.1440371708.txt.gz · Last modified: 2015/08/23 23:15 by jchilders